E. coli RIL-seq data for ProQ and Hfq
Melamed, S., Adams, P.P., Zhang, A., Zhang, H. and Storz, G. (2020) RNA-RNA interactomes of ProQ and Hfq reveal overlapping and competing roles. Mol. Cell, 77:411-425.e7.
E. coli RIL-seq data for Hfq
Melamed, S., Peer, A., Faigenbaum-Romm, R., Gatt, Y.E., Reiss, N., Bar, A., Altuvia, Y., Argaman, L. and Margalit, H. (2016) Global mapping of small RNA-target interactions in bacteria. Mol. Cell 63:884-897. (These data a mapped to E. coli genome NC_000913.2)
RILseqDB
A database of Hfq-mediated RNA interactions determined by RIL-seq
https://rilseqdb.cs.huji.ac.il/
V. cholerae RIL-seq data for Hfq
Huber, M., Lippegaus, A., Melamed, S., Siemers, M., Wucher, B.R., Hoyos, M., Nadell, C., Storz, G., Papenfort, K. (2022) An RNA sponge controls quorum sensing dynamics and biofilm formation in Vibrio cholerae. Nat Commun 13, 7585.
V. cholerae RIL-seq data for ProQ
Ghandour R, Devlitsarov D, Popp P, Melamed S, Huber M, Siemers M, Krüger T, Kniemeyer O, Klingl A, Brakhage AA, Erhardt M, Papenfort K. ProQ-associated small RNAs control motility in Vibrio cholerae. Nucleic Acids Research 2024;gkae1283.
P. aeruginosa RIL-seq data for Hfq
Gebhardt, M.J., Farland, E.A., Basu, P., Macareno, K., Melamed, S., Dove, S.L. (2023) Hfq-licensed RNA-RNA interactome in Pseudomonas aeruginosa reveals a keystone sRNA