Publications

2025
Biological insights from RNA–RNA interactomes in bacteria, as revealed by RIL-seq
Silverman A, Melamed S. Biological insights from RNA–RNA interactomes in bacteria, as revealed by RIL-seq [Internet]. In: High Throughput Gene Screening. New York: Springer Protocols; 2025Available from: Publisher's Version
2024
Ghandour R, Devlitsarov D, Popp P, Melamed S, Huber M, Siemers M, Krüger T, Kniemeyer O, Klingl A, Brakhage AA, Erhardt M, Papenfort K. ProQ-associated small RNAs control motility in Vibrio cholerae [Internet]. Nucleic Acids Research 2024;gkae1283. Available from: Publisher's Version
2023
Melamed S, Zhang A, Jarnik M, Mills J, Silverman A, Zhang H, Storz G. σ28-dependent small RNA regulation of flagella biosynthesis [Internet]. eLife 2023;12:RP87151.Available from: Publisher's Version
Gebhardt MJ, Farland EA, Basu P, Macareno K, Melamed S, Dove SL. Hfq-licensed RNA–RNA interactome in Pseudomonas aeruginosa reveals a keystone sRNA [Internet]. Proceedings of the National Academy of Sciences 2023;120(21):e2218407120.Available from: Publisher's Version
Papenfort K, Melamed S. Small RNAs, large networks: Posttranscriptional regulons in gram-negative bacteria [Internet]. Annual Review of Microbiology 2023;Available from: Publisher's Version
2022
Melamed S. A novel approach for engineering biological systems by interfacing computer science with synthetic biology. Peer Community in Genomics 2022;(100157):1-6.
Melamed S. Introducing new group leaders: Sahar Melamed. Molecular Cell 2022;82:4189-4191.
Huber M, Lippegaus A, Melamed S, Siemers M, Wucher BR, Hoyos M, Nadell C, Storz G, Papenfort K. An RNA sponge controls quorum sensing dynamics and biofilm formation in Vibrio cholerae. Nature Communications 2022;13(1):1-14.
2020
Melamed S. New sequencing methodologies reveal interplay between multiple RNA-binding proteins and their RNAs. Current Genetics 2020;:1–5.
RNA-RNA interactomes of ProQ and Hfq reveal overlapping and competing roles
Melamed S, Adams PP, Zhang A, Zhang H, Storz G. RNA-RNA interactomes of ProQ and Hfq reveal overlapping and competing roles. Molecular cell 2020;77(2):411–425.
2018
Melamed S, Faigenbaum-Romm R, Peer A, Reiss N, Shechter O, Bar A, Altuvia Y, Argaman L, Margalit H. Mapping the small RNA interactome in bacteria using RIL-seq. nature protocols 2018;13(1):1–33.
2016
Melamed S, Belkin S. Bioluminescent whole-cell sensors: Integration of bacterial reporter cells onto hardware platforms. In: Bioluminescent Microbial Biosensors: Design, Construction, and Implementation. Pan Stanford Series on the High-Tech of Biotechnology; 2016
Melamed S, Peer A, Faigenbaum-Romm R, Gatt YE, Reiss N, Bar A, Altuvia Y, Argaman L, Margalit H. Global mapping of small RNA-target interactions in bacteria. Molecular Cell 2016;63(5):884–897.
2014
Melamed S, Naftaly S, Belkin S. Improved detection of antibiotic compounds by bacterial reporter strains achieved by manipulations of membrane permeability and efflux capacity. Applied microbiology and biotechnology 2014;98(5):2267–2277.
2012
Kessler N, Schauer JJ, Yagur-Kroll S, Melamed S, Tirosh O, Belkin S, Erel Y. A bacterial bioreporter panel to assay the cytotoxicity of atmospheric particulate matter. Atmospheric Environment 2012;63:94–101.
Pedahzur R, Melamed S, Lalush C, Elad T, Yagur-Kroll S, Belkin S. A bacterial reporter panel for the detection and classification of antibiotic substances. Microbial Biotechnology 2012;
Melamed S, Elad T, Belkin S. Microbial sensor cell arrays. Current Opinion in Biotechnology 2012;23(1):2–8.
2011
Elad T, Almog R, Yagur-Kroll S, Levkov K, Melamed S, Shacham-Diamand Y, Belkin S. Online monitoring of water toxicity by use of bioluminescent reporter bacterial biochips. Environmental science & technology 2011;45(19):8536–8544.
Melamed S, Ceriotti L, Weigel W, Rossi F, Colpo P, Belkin S. A printed nanolitre-scale bacterial sensor array. Lab on a Chip 2011;11(1):139–146.
Ben-Yoav H, Melamed S, Freeman A, Shacham-Diamand Y, Belkin S. Whole-cell biochips for bio-sensing: integration of live cells and inanimate surfaces. Critical reviews in biotechnology 2011;31(4):337–353.